NBD expertise resides in the application of computational chemistry tools aimed at accelerating, streamlining and optimizing the design of small biomolecules.
To this aim we created the NBD Suite, a comprehensive software solution for biomolecule design encompassing molecular modeling in Drug Discovery, Enzyme Engineering, and Nucleic Acids with Bioinformatics and Artificial Intelligence packages. At its heart is PELE, an in-house Monte Carlo algorithm that can explore a wide range of the conformational space of biological systems within a few hours. It is suitable for determining the binding mode of small molecules at a protein binding site, taking into account the flexibility of the surrounding side chains. This platform can be combined with other computational techniques, such as molecular dynamics simulations, to obtain a time-resolved picture of macromolecules that explicitly describes their accessible conformational space and the coupling of their dynamics with the potential ligand(s) and solvent.